Evolution section: references cited (continuation from Classification.EvolutionReferences1)

Kawarabashyi, Y., et al., (1999). Complete genome sequence of an aerobic hyperthermophilic crenarchaeon, Aeropyrum pernix K1. DNA Res. 6, 83 - 101.

Kim, J. F., (2001). Revisiting the chlamydial type Ill protein secretion system: clues to the origin of type Ill protein secretion. Trends in Gen. 17, 65 - 69.

Klenk, K-P., et al., (1997). The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature 390, 364 - 370.

Kocan, K.W et al., Development of a rickettsia isolated from an aborted bovine fetus. J. Bacteriol. 172:5949-5955.

Kubori, T., et al., (1998). Supramolecular structure of the Salmonella typhimurium Type Ill protein secretion system. Science 280, 602 - 605. Full article [Acrobat]

Kumar. S. and S. B. Hedges (1998). A molecular time scale for vertebrate evolution. Nature 392, 917 - 920.

Kunst, F., et al., (1997). The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature 390, 249 - 256.

Kurland, C. G., and S. G. E. Andersson, (2000). Origin and evolution of the mitochondrial proteome. Microbiol. Mol. Biol. Rev. 64, 786 - 820. Full article

Lang, B. F., et al., (1997). An ancestral mitochondrial DNA resembling a eubacterial genome in miniature. Nature 387, 492 - 497.

Levy, N. J., and J. W. Moulder, (1982). Attachment of cell walls of Chlamydia psittaci to mouse fibroblasts (L cells). Infect. Immun. 37, 1059 -1065.

Levin, S., (1999). Fragile dominion. Complexity and the commons. Perseus Publishing, Cambridge. MA

Ludwig, W., et al., (1993). Phylogenetic relations of Bacteria based on comparative sequence analysis of elongation factor Tu and ATP-synthetase beta-subunit genes. Antonie van Leeuwenhoek 64, 285 - 305.

Lutkenhaus, I. and S. G. Addinall, (1997). Bacterial cell division and the Z ring. Annu. Rev. Biochem. 66, 93 - 116.

Lwoff, A., (1944). Evolution physiologique, etude des pertes de fonctions chez les microorganisms. Hermann et Cie, Paris.

Mathews, S., et al., (2001). Differential expression of ompA ompB, pyK, nipD, and Cpn0585 genes between normal and interferon-gamma treated cultures of Chlamydia trachomatis. Microbial Pathogenesis 30, 337 - 345.

Matsumoto, A., (1988). Structural characteristics of chlamydial bodies. p.21-45. In A. L. Barron, Editor. Microbiology of Chlamydia. CRC Press, Boca Raton, FL.

Matsumoto, A., E, Fujiwara, and N. Higashi., (1976). Observations on the surface projections of infectious small cells of Chlamydia psittaci in thin sections. J. Electron Microsc. 25, 169 - 170.

May, B. I, et al., (2001). Complete genomic sequence of Pasteurella multocida, PM70. Proc. Nat. Acad. Sci. U. S. A. 98, 3460 - 3465. Full article [Acrobat]

Mayr, E., and W. B. Provine, (1998). The evolutionary synthesis. Perspectives on the unification of biology. Harvard University Press, Cambridge, MA.

McClarty, G., (1994). Chlamydiae and the biochemistry of intracellular parasitism. Trends in Microbiol. 2, 157 - 164.

McClarty, G., (1999). Chlamydial metabolism as inferred from the complete genome sequence. In R.S. Stephens, Editor. Chlamydia. Intracellular biology, pathogenesis, and immunity. ASM Press, Washington, D. C., 1999.

Medzhitov, R., and C. Janeway, Jr., (2000). The toll receptor family and microbial recognition. Trends in Microbiol. 8, 452 - 456. Full article (Biomednet)

Michaux, S., et al., (1993). Presence of two independent chromosomes in the Brucella melitensis 16M genome. J. Bacteriol. 179, 3244 - 3249.

Michel, R., et al., (1994). Acanthamoeba from human nasal mucosa infected with an obligate intracellular parasite. Eur. J. Protistol. 30, 104 - 110.

Mohlmann, T., et al., (1998). Occurrence of two plastid ATP/ADP transporters in Arabidopsis thaliana L. Molecular characterization and comparative structural analysis of similar ATP/ADP translocators from plastids and Rickettsia prowazekii. Eur. J. Biochem. 252, 353 - 369.

Moran, N. A., (1996). Accelerated evolution and Muller's rachet in endosymbiotic bacteria. Proc. Nat. Acad. Sci. U. S. A. 93, 2873 - 2378. Full article [Acrobat]

Moran, N. A. (2001). Bacterial menageries inside insects. Proc. Nat. Acad. Sci. U. S. A. 98, 1338 - 1340. Full article [Acrobat]

Moran, N. A. and P. Baumann, (2000). Bacterial endosymbionts in animals. Curr. Opinion Microbiol. 3, 270 - 275. Full article (Biomednet)

Moulder, J. W., (1969). A model for studying the biology of intracellular parasitism. Chlamydia psittaci and L cells (mouse fibroblasts). BioScience 19, 875 - 881.

Moulder, J. W., (1974). Intracellular parasitism: life in an extreme environment. J Infect. Dis. 130, 300 - 306.

Moulder, J. W., (1985). Comparative biology of intracellular parasitism. Microbiol. Rev. 49, 298 - 337.

Moulder, J. W., (1988). Characteristics of chlamydiae. p. 21-46. In A. L. Barron, Editor. Microbiology of chlamydia. CRC Press, Boca Raton, FL

Moulder, J. W., (1991). Interaction of chlamydiae and host cells in vitro. Microbiol. Rev. 55, 143 - 190.

Moulder, J. W., (1993). Why is Chlamydia sensitive to penicillin in the absence of peptidoglycan? Infect. Agents Dis. 2, 87 - 90.

Muller, M., and Martin, W., (1999). The genome of Rickettsia prowazekii and some thoughts on the origin of mitochondria and hydrogenosomes. BioEssays 21, 377 - 381.

Mushegian, A., (1999). The minimal genome concept. Curr. Opinion Gen. Develop. 9, 707 - 714. Full article (Biomednet)

Nataro, J. P., M. J. Blaser, and S. Cunningham-Rundles., (2000). Persistent bacterial infections: commensalism gone awry or adaptive niche? In J. P. Nataro, M. J. Blaser, and S. Cunningham-Rundles, Editors. Persistent bacterial infections. ASM Press, Washington, D. C.

Nelson, K. E., et al., (1999). Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermatoga maritima. Nature: 399, 323 - 329.

Neuhard, I, and R. A. Klein., (1996). Biosynthesis and conversion of pyrimidines. p. 580-599. In F. C. Neidhardt, Editor. Escherichia coli and Samonella. ASM Press, Washington, D. C.

Ng, W. V, et al., (2000). Genome sequence of halobacterium species NRC-1. Proc. Nat. Acad. Sci. U. S. A. 97, 12176 - 12181. Full article [Acrobat]

Nguyen, L., et al., (2000). Phylogenetic analyses of the constituents of type Ill protein secretion systems. J. Mol. Microbiol. Biotechnol. 2, 125 - 144.

Nierman, W. C., et al., (2001). Complete genome sequence of Caulobacter crescentus. Proc. Nat. Acad. Sci. U. S. A. 98, 4136 - 4141. Full article [Acrobat]

Nolling, J., et al., (2001). Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum. J. Bacteriol. 183:4823-4838.

Ochman, H., and N. A. Moran, (2001). Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis. Science 292, 1096 - 1098.

Ogata, H., et al., (2001). Mechanisms of evolution in Rickettsia conorrii and R. rickettsii Science 293, 2093 - 2098.

Ojcius, D. M., et al., (1998). Apoptosis of epithelial cells and macrophages due to infection with the obligate intracellular pathogen Chlamydia psittici. J. Immunol. 161, 4220 - 4226. Full article [Acrobat]

Ojcius, D. C., et al, (1998). Enhancement of ATP levels and glucose metabolism during infection by Chlamydia. J. Biol. Chem. 273, 7052 - 7058. Full article [Acrobat]

Ossewaarde, J. M., and A. Meijer., (1999). Molecular evidence for the existence of additional members of the order Chlamydiales. Microbiology 145, 411 - 417. Full article [Acrobat]

Palmer, G. H. (2002). The highest priority: what microbial genomes are telling us about immunity. Veterinary Immunology and Immunopathology 85, 1 - 8. [Review].

Pang, H., and H. H. Winkler., (1994). Analysis of the peptidoglycan of Rickettsia prowazekii. J. Bacteriol. 176, 923 - 926.

Parkhill, J., et al., (2000). Complete DNA sequence of serogroup A strain of Neisseria meningitidis Z2491. Nature 404, 502 - 506.

Parkhill, J., et al., (2001). Genome sequence of Yersinia pestis, the causative agent of plague. Nature 413, 523 - 527.

Parkhill, J, et al., (2001). Complete genome sequence of a multiple drug resistant Salmonella enterica serovar typhi CT18. Nature 413, 848 - 856.

Perry, L. L., et al., (1999). Differential sensitivity of distinct Chlamydia trachomatis isolates to IFN-gamma-mediated inhibition. J. Immunol. 162, 3541 - 3548. Full article [Acrobat]

Pierce, K. R., L. H. Carroll, and R. W. Moore, (1964). Experimental transmission of ornithosis from sheep to turkeys. Am. J. Vet. Res. 25, 977 - 980.

Piano, G. V., J. B. Day, and F. Ferracci, (2001). Type Ill export: new uses for an old pathway. Mol. Microbiol. 40, 284 - 293.

Read, T. D., et al., (2000). Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39. Nucleic Acids Res. 28, 1397 - 1406.Full article [Acrobat]

Rockey, D. D., J. Lenart, and R. S. Stephens. (2000). Genome sequencing and our understanding of chlamydiae. Infect. Immun. 68, 5473 - 5479. Full article [Acrobat]

Rothfield, L., S. Justice, and J. Garcia-Lara, (1999). Bacterial cell division. Annu. Rev. Gen. 33, 423 - 448.

Rurangirwa, F. R., et al., (1999). Analysis of the 16S rRNA gene of microorganism WSU 86-1044 from an aborted calf foetus reveals that it is a member of the order Chlamydiales: proposal of Waddliaceae fam. nov., Waddlia chondrophila gen. nov. sp. nov. Int. J. Syst. Bacteriol. 49, 577 - 581.

Rydkina., E., V. Roux. and D. Raoult., (1999). Determination of the genome size of Ehrlichia spp., using pulsed field gel electrophoresis. FEMS Microbiol. Letters 176, 73 - 78.

Schachter, J., (1999). Infection and disease epidemiology. p.139-170. In R. S. Stephens, Editor. Chlamydia: Intracellular biology, pathogenesis , and immunity. ASM Press, Washington, D. C.

Shapiro, J. A., (1997). Multicellularity: the rule, not the exception. Lessons from Escherichia coli colonies. p.14-52. In J. A. Shapiro and M. Dworkin, Editors. Bacteria as multicellular organisms. Oxford University Press, New York, NY

*Shigenobu, S., et al., (2000). Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. Nature 407, 81 - 86.

Shimkets, L. J., (1999). Intercellular signalling during fruiting-body development of Myxococcus xanthus. Annu. Rev. Microbiol_. 53, 525 - 549.

Shirai, M., et al., (2000). Comparison of whole genome sequences of Chlamydia pneumoniae J138 from Japan and CWL029 from USA. Nucleic Acids Res. 28, 2311 - 2314. Full article [Acrobat]

Staskawicz, B. J. et al., (2001). Contrasting themes of plant and animal diseases. Science 292, 2285 - 2289.

Stephens, R. S., et al., (1998). Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. Science 282, 754 - 759.

Stephens, R. S., Editor. (1999a). Chlamydia. Intracellular biology, pathogenesis, and immunity. ASM Press, Washington D. C., 1999.

Stephens, R. S., (1999b). Genomic autobiographies of chlamydiae. p.9-28. In R. S. Stephens, Editor. Chlamydia. Intracellular biology, pathogenesis, and immunity. ASM Press, Washington D.C.

Stover, C. K., et al., (2000). Complete genome sequence of Pseudomonas aeruginosa PA01, an opportunistic pathogen. Nature 406, 959 - 964.

Subtil, A., A. Blocker, and A. Dautry-Varsat (2000). Type Ill secretion system in Chlamydia species: identified members and candidates. Microbes Infect. 2, 367 - 369.

Subtil, A., C. Parsot, and A. Dautry-Varsat (2001). Secretion of predicted Inc proteins of Chlamydia pneumoniae by a heterologous type Ill machinery. Mol. Microbiol. 39, 792 - 800.

Sun, L. V., et al., (2001). Determination of Wolbachia genome size by pulsed field gel electrophoresis. J. Bacteriol. 183, 2219-2225. Full article [Acrobat]

Tanner, M. A., J. K. Harris, and N.R. Pace., (1999). Molecular phylogeny of Chlamydia and relatives. p.1-8. In R. S. Stephens, Editor. Chlamydia. Intracellular biology, pathogenesis, and immunity. ASM Press New York, NY.

Tettelin, H., et al., (2000). Complete genome sequence of Neisseria meningitidis serogroup B strain MC58. Science 287, 1809 - 1815.

Tipples, G., and G. McClarty., (1993). The obligate intracellular bacterium Chlamydia trachomatis is auxotrophic for three of the four ribonucleoside triphosphates. Mol. Microbiol. 8, 1105 - 1114.

Tisa, L. S., and J. C. Ensign., (1988). Evidence for adenylate nucleotide transport (ATP / ADT translocation) in vesicles of Frankia sp. strain EAN1pec. J. Bacteriol. 170, 3053 - 3057.

Tjaden, J., et al., (1999). Two nucleotide transport proteins in Chlamydia trachomatis, one for net nucleoside triphosphate uptake and the other for transport of energy. J Bacteriol. 181, 1196 - 1202. Full article [Acrobat]

Tomb, J. F., et al., (1997). The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388, 539 - 547.

Vandahl, B. B., et al., (2001). Proteome analysis of the Chlamydia pneumoniae elementary body. Electrophoresis 22, 1204 - 1223.

Viale, A. M., et al., (1994). Evolutionary relationships among eubacterial groups as inferred from GroEL (chaperonin) sequence comparisons. Int. J. Syst. Bacteriol. 44, 527 - 533.

von Dohlen, C. D. et al., (2001). Mealybug beta-proteobacterial endosymbionts contain gamma-proteobacterial symbionts. Nature 412, 433 - 436.

Ward, M. E., (1999). Mechanisms of chlamydia-induced disease., p 171-210. In R. S. Stephens, Editor. Chlamydia. Intracellular biology, pathogenesis, and immunity. ASM Press, Washington, D. C.

Ward, N. L., et al., (2000). Comparative phylogenetic analysis of members of the order Planctomycetales and the division Verrucomicrobia: 23S rRNA gene sequence analysis supports the 16S rRNA gene sequence-derived phylogeny. Int. J. Syst. Evol. Microbiol. 50,1965 - 1972.

Weisberg, W. G., et al., (1989). Phylogenetic diversity of the rickettsiae. J. Bacteriol. 171, 4202 - 4206.

Willems, H., C. Jager, and G. Balger., (1998). Physical and genetic map of the obligate intracellular bacterium Coxiella burnettii. J. Bacteriol. 180, 3816 - 3822. Full article [Acrobat]

Winkler, H. H., (1976). Rickettsial permeability. An ADP-ATP transport system. J. Biol. Chem. 251, 389 - 396.

Winkler, H. H., (1990). Rickettsia species (as organisms). Annu. Rev. Microbiol. 44, 131 - 154.

Winkler, H. H., and H. E. Neuhaus., (1999). Non-mitochondrial ATP transport. Trends Biochem. Sci. 24, 64 - 68.

White, O., (1999). Genome sequence of the radio-resistant bacterium Deinococcus radiodurans R1. Science 286, 1571 - 1577.

Wolf, Y. L,, I. Aravind, and E.V. Koonin., (1999). Rickettsiae and Chlamydiae. Evidence of horizontal gene transfer and gene exchange. Trends in Genetics 15, 173 - 175. Full article (Biomednet)

Woolhouse, M. E. J., L. H. Taylor, and D. T. Hayden, (2001). Population biology of multihost pathogens. Science 292, 1109 - 1112.

Zalkin, Irl., and P. Nygaard, (1996). Biosynthesis of purine nucleotides. p.591 - 579. In F. C. Neidhardt, Editor. Escherichia coli and Salmonella. ASM Press. Washington, D. C.

Zamenhof, S., and H. H. Eichhorn, (1967). Study of microbial evolution through loss of biosynthetic functions: establishment of "defective" mutants. Nature 216, 456 - 458.

Zhong, G., et al., (2000). Degradation of transcription factor R1FX5 during the inhibition of both constitutive and interferon gamma-inducible major histocompatibility complex class 1 expression in chlamydia-infected cells. J. Exp. Med. 191, 1525 - 1534.

Zhong, G, et al., (2001). Identification of a chlamydial protease-like activity factor responsible for the degradation of host transcription factors. J. Exp. Med. 193, 935 - 942.

Zhong, G, et al., (2001). Characterization of integration host factor (IHIF) binding upstream of the cysteine-rich protein operon (omcAB) promoter of Chlamydia trachomatis LGV serovar 2. Mol. Microbiol. 41, 451 - 462.

Zomorodipour, A, and S. G. E. Andersson, (1999). Obligate intracellular parasites: Rickettsia prowazekii and Chlamydia trachomatis. FEBS Letters 452, 11 - 15.



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